g2gtools.exceptions module

exception g2gtools.exceptions.G2GBAMError(msg=None)[source]

Bases: g2gtools.exceptions.G2GError

BAM/SAM file errors

exception g2gtools.exceptions.G2GBedError(msg=None)[source]

Bases: g2gtools.exceptions.G2GError

BED file errors

exception g2gtools.exceptions.G2GChainFileError(msg=None)[source]

Bases: g2gtools.exceptions.G2GError

Chain file errors

exception g2gtools.exceptions.G2GCigarFormatError(msg=None)[source]

Bases: g2gtools.exceptions.G2GError

Cigar exception/error

exception g2gtools.exceptions.G2GError(msg=None)[source]

Bases: exceptions.Exception

Simple base exception, root of all G2G exceptions

exception g2gtools.exceptions.G2GFastaError(msg=None)[source]

Bases: g2gtools.exceptions.G2GError

Fasta file errors

exception g2gtools.exceptions.G2GFetchError(msg=None)[source]

Bases: g2gtools.exceptions.G2GError

G2G Fetch errors

exception g2gtools.exceptions.G2GGTFError(msg=None)[source]

Bases: g2gtools.exceptions.G2GError

GTF file errors

exception g2gtools.exceptions.G2GRegionError(msg=None)[source]

Bases: g2gtools.exceptions.G2GError

Region errors

exception g2gtools.exceptions.G2GVCFError(msg=None)[source]

Bases: g2gtools.exceptions.G2GError

VCF file errors

exception g2gtools.exceptions.G2GValueError(msg=None)[source]

Bases: g2gtools.exceptions.G2GError

Generic value error for G2G

exception g2gtools.exceptions.KeyboardInterruptError[source]

Bases: exceptions.Exception

Keyboard Interrupt errors